APCluster: an R package for affinity propagation clustering _{Bioinformatics}

Author(s):	Ulrich Bodenhofer, Andreas Kothmeier, Sepp Hochreiter
Published:	Bioinformatics, 27(17):2463-2464, July 2011, doi:10.1093/bioinformatics/btr406, opens an external URL in a new window
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Software:	APCluster, opens an external URL in a new window

Complex networks govern coiled coil oligomerization - Predicting and profiling by means of a machine learning approach _{Mol Cell Proteomics}

Author(s):	Carsten C. Mahrenholz, Ingrid Abfalter, Ulrich Bodenhofer, Rudolf Volkmer, Sepp Hochreiter
Published:	Mol Cell Proteomics, May 2011, doi: 10.1074/mcp.M110.004994, opens an external URL in a new window
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cn.FARMS: a latent variable model to detect copy number variations in microarray data with a low false discovery rate _{Nucl. Acids Res.}

Author(s):	Djork-Arné Clevert, Andreas Mitterecker, Andreas Mayr, Günter Klambauer, Marianne Tuefferd, An De Bondt, Willem Talloen, Hinrich Göhlmann, Sepp Hochreiter
Published:	Nucl. Acids Res., 39(12):e79, 2011, doi:10.1093/nar/GKR197, opens an external URL in a new window
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Software:	cn.farms, opens an external URL in a new window

An analysis pipeline for detecting copy number variations with a low false discovery rate in microarray data _ICHG/ASHG

Author(s):	Djork-Arné Clevert, Andreas Mitterecker, Andreas Mayr, Günter Klambauer, Marianne Tuefferd, An De Bondt, Willem Talloen, Hinrich Göhlmann, Sepp Hochreiter
Published:	12th International Congress of Human Genetics and the American Society of Human Genetics (ICHG/ASHG 2011), Montreal, Canada, Oct 11-15 2011
Abstract:	PDF, opens an external URL in a new window

Accurate detection of copy number variations in next generation sequencing data by a latent variable model _ICHG/ASHG

Author(s):	Günter Klambauer, Djork-Arné Clevert, Andreas Mayr, Karin Schwarzbauer, Andreas Mitterecker, Sepp Hochreiter
Published:	12th International Congress of Human Genetics and the American Society of Human Genetics (ICHG/ASHG 2011), Montreal, Canada, Oct 11-15 2011
Abstract:	PDF, opens an external URL in a new window

Copy number aberrations affecting adhesion genes involved in the development of the cerebellar vermis are associated with autism spectrum disorders _ICHG/ASHG

Author(s):	Günter Klambauer, Djork-Arné Clevert, Andreas Mayr, Karin Schwarzbauer, Andreas Mitterecker, Sepp Hochreiter
Published:	12th International Congress of Human Genetics and the American Society of Human Genetics (ICHG/ASHG 2011), Montreal, Canada, Oct 11-15 2011
Abstract:	PDF, opens an external URL in a new window

Copy number aberrations affecting adhesion genes involved in the development of the cerebellar vermis are associated with autism spectrum disorders _ICHG/ASHG

Author(s):	Sepp Hochreiter, Djork-Arné Clevert
Published:	12th International Congress of Human Genetics and the American Society of Human Genetics (ICHG/ASHG 2011), Montreal, Canada, Oct 11-15 2011
Abstract:	PDF, opens an external URL in a new window

Controlling the false discovery rate at detection of biological aberrations in -omic data _CAMDA

Author(s):	Djork-Arné Clevert, Andreas Mayr, Andreas Mitterecker, Günter Klambauer, Sepp Hochreiter
Published:	CAMDA 2011, Satellite Meeting of ISMB/ECCB 2011, Vienna, July 15-16, 2011
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cn.MOPS: mixture of Poissons for discovering copy number variations in next generation sequencing data _HGV

Author(s):	Günter Klambauer, Djork-Arné Clevert, Sepp Hochreiter
Published:	Poster at 12th International Meeting on Human Genome Variation and Complex Genome Analysis (HGV 2011), San Francisco, USA, Sep 8-10 2011
Abstract:	PDF, opens an external URL in a new window

Copy Number Aberrations Affecting the Developing Cerebellar Vermis are Associated with Autism Spectrum Disorders _HGV

Author(s):	Sepp Hochreiter, Djork-Arné Clevert
Published:	Poster at 12th International Meeting on Human Genome Variation and Complex Genome Analysis (HGV 2011), San Francisco, USA, Sep 8-10 2011
Abstract:	PDF, opens an external URL in a new window

A low false discovery rate at detection of copy-number aberrations in microarray data _HGV

Author(s):	Djork-Arné Clevert, Andreas Mayr, Andreas Mitterecker, Günter Klambauer, Sepp Hochreiter
Published:	Poster at 12th International Meeting on Human Genome Variation and Complex Genome Analysis (HGV 2011), San Francisco, USA, Sep 8-10 2011
Abstract:	PDF, opens an external URL in a new window

Detecting rare copy number variations (CNVs) with sparse coding _ISMB

Author(s):	Andreas Mitterecker, Djork-Arné Clevert, Andreas Mayr, An De Bondt, Willem Talloen, Hinrich Göhlmann, Sepp Hochreiter
Published:	Poster at 19th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Vienna, Austria, July 17 - July 19 2011

Collaborative action between Spain and Austria to enhance the application of High Performance Computing to High throughput technologies _ISMB 

Author(s):	Pau Corral, Noura Chelbat, Antonio Muñoz, Johan Karlsson, Alfredo Martínez, Günter Klambauer, Sepp Hochreiter, Oswaldo Trelles, Ulrich Bodenhofer
Published:	Poster at 19th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Vienna, Austria, July 17 - July 19 2011

Genome-wide chromatin remodeling at G/C-rich long nucleosome-free regions containing SP1 and MAZ binding sites _ISMB

Author(s):	Karin Schwarzbauer , Ulrich Bodenhofer, Sepp Hochreiter
Published:	Poster at 19th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Vienna, Austria, July 17 - July 19 2011

cn.FARMS: a latent variable model to detect copy number variations in microarray data with a low false discovery rate _ISMB

Author(s):	Djork-Arné Clevert, Andreas Mitterecker, Andreas Mayr, Günter Klambauer, Marianne Tuefferd, An De Bondt, Willem Talloen, Hinrich Göhlmann, Sepp Hochreiter
Published:	Poster at 19th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Vienna, Austria, July 17 - July 19 2011

Possible sources of wrongly performing probes: from oligonucleotides arrays to NGS _ISMB

Author(s):	Noura Chelbat, Sepp Hochreiter, Ulrich Bodenhofer
Published:	Poster at 19th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Vienna, Austria, July 17 - July 19 2011

cn.MOPS: Mixture of Poissons for Discovering Copy Number Variations in Next Generation Sequencing Data _ISMB

Author(s):	Günter Klambauer, Sepp Hochreiter, Karin Schwarzbauer, Andreas Mayr, Djork-Arné Clevert
Published:	Poster at 19th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Vienna, Austria, July 17 - July 19 2011

Complex networks govern coiled coil oligomerization - predicting and profiling by means of a machine learning approach _ISMB

Author(s):	Ulrich Bodenhofer, Carsten Mahrenholz, Ingrid Abfalter, Rudolf Volkmer, Sepp Hochreiter
Published:	Poster at 19th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Vienna, Austria, July 17 - July 19 2011

Detection of nonlinear effects in gene expression pathways _ISMB

Author(s):	Andreas Mayr, Djork-Arné Clevert, Sepp Hochreiter
Published:	Poster at 19th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Vienna, Austria, July 17 - July 19 2011

FABIA: Factor Analysis for Bicluster Acquisition _ISMB

Author(s):	Djork-Arné Clevert, Ulrich Bodenhofer, Martin Heusel, Andreas Mayr, Andreas Mitterecker, Adetayo Kasim, Tatsiana Khamiakova, Suzy Van Sanden, Dan Lin, Willem Talloen, Luc Bijnens, Hinrich Göhlmann, Ziv Shkedy, Sepp Hochreiter
Published:	Poster at 19th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Vienna, Austria, July 17 - July 19 2011

Making an R package of the PSVM _{Master Thesis}

Author(s):	Alexander Lechner
Published:	Master Thesis, June 2011

Detection of nonlinear effects in gene expression pathways _{Master Thesis}

Author(s):	Andreas Mayr
Published:	Master Thesis, May 2011