HapFABIA: Identification of very short segments of identity by descent characterized by rare variants in large sequencing data _{Nucl. Acids Res.}

Author(s):	Sepp Hochreiter
Published:	Nucl. Acids Res., 41(22):e202, 2013 doi:10.1093/nar/gkt1013, opens an external URL in a new window
Download:	Full Text, opens an external URL in a new window
Software:	hapFabia, opens an external URL in a new window
Report:	Very Short IBD Sharing between Humans, Neandertals (Neanderthals), and Denisovans, opens an external URL in a new window

DEXUS: Identifying Differential Expression in RNA-Seq Studies with Unknown Conditions _{Nucl. Acids Res.}

Author(s):	Günter Klambauer, Thomas Unterthiner, Sepp Hochreiter
Published:	Nucl. Acids Res., 41(21):e198, 2013 doi:10.1093/nar/gkt834, opens an external URL in a new window
Download:	Full Text, opens an external URL in a new window
Software:	DEXUS, opens an external URL in a new window

Increasing the discovery power of -omics studies _CAMDA

Author(s):	Djork-Arné Clevert, Andreas Mayr, Andreas Mitterecker, Günter Klambauer, Armand Valsesia, Karl Forner, Marianne Tuefferd, Willem Talloen, Jérôme Wojcik, Hinrich Göhlmann, Sepp Hochreiter
Published:	Systems Biomedicine, 1:2, Special Issue: Proceedings of the Conferences for the Critical Assessment of Massive Data Analysis (CAMDA): 2011 and 2012, 2013 doi:10.4161/sysb.25774, opens an external URL in a new window
Download:	Abstract/Full Text, opens an external URL in a new window

Testing noisy numerical data for monotonic association _{Inform. Sci.}

Author(s):	Ulrich Bodenhofer, Martin Krone, Frank Klawonn
Published:	Inform. Sci., 245:21–37, 2013 doi:10.1016/j.ins.2012.11.026, opens an external URL in a new window
Software:	RoCoCo, opens an external URL in a new window

HapFABIA: Identification of very short segments of identity by descent (IBD) via biclustering _ASHG

Author(s):	Sepp Hochreiter, Gundula Povysil
Published:	Talk at Annual Meeting of the American Society of Human Genetics (ASHG 2013), Boston, USA, October 22-26, 2013
Abstract:	PDF, opens an external URL in a new window

Detecting Differentially Expressed Genes in RNA-Seq Data with Unknown Conditions _ASHG

Author(s):	Günter Klambauer, Thomas Unterthiner, Sepp Hochreiter
Published:	Poster at Annual Meeting of the American Society of Human Genetics (ASHG 2013), Boston, USA, October 22-26, 2013
Abstract:	PDF, opens an external URL in a new window

PODKAT: a non-burden test for associating complex traits with rare and private variants _ASHG

Author(s):	Ulrich Bodenhofer, Sepp Hochreiter
Published:	Poster at Annual Meeting of the American Society of Human Genetics (ASHG 2013), Boston, USA, October 22-26, 2013
Abstract:	PDF, opens an external URL in a new window

IBD Mapping of Autism Microarray Data _ASHG

Author(s):	Gundula Povysil, Sepp Hochreiter
Published:	Poster at Annual Meeting of the American Society of Human Genetics (ASHG 2013), Boston, USA, October 22-26, 2013
Abstract:	PDF, opens an external URL in a new window

 

Computational Methods Aiding Early-Stage Drug Design (Dagstuhl Seminar 13212) _{Dagstuhl Reports}

Author(s):	Andreas Bender, Hinrich Göhlmann, Sepp Hochreiter, Ziv Shkedy
Published:	Dagstuhl Reports, 3(5):78-94, 2013, doi:10.4230/DagRep.3.5.78, opens an external URL in a new window (Seminar Homepage), opens an external URL in a new window
Download:	PDF, opens an external URL in a new window

Detecting rare copy number variations (CNVs) with sparse coding _ISMB

Author(s):	Andreas Mitterecker, Djork-Arné Clevert, Andreas Mayr, Willem Talloen, Hinrich W.H. Göhlmann, Sepp Hochreiter
Published:	Poster at 21st Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Berlin, Germany, July 21 - July 23 2013

Protein target prediction with Logistic regression in a large scale setting _ISMB

Author(s):	Andreas Mayr, Andreas Mitterecker, Günter Klambauer, Martin Heusel, Aakash Chavan Ravindranath, Andreas Bender, Jörg K. Wegner, Sepp Hochreiter
Published:	Poster at 21st Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Berlin, Germany, July 21 - July 23 2013

Bicluster analysis in drug discovery _ISMB

Author(s):	Martin Heusel, Djork-Arné Clevert, Günter Klambauer, Andreas Mayr, Andreas Mitterecker, Ulrich Bodenhofer, Sepp Hochreiter
Published:	Poster at 21st Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Berlin, Germany, July 21 - July 23 2013

Platform specific performance characteristics in view of ERCC spike-ins _ISMB

Author(s):	Pawel P. Labaj, David Kreil, Nancy Stralis-Pavese, Djork-Arné Clevert, Mario Fasold, Hans Binder, Sepp Hochreiter
Published:	Poster at 21st Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Berlin, Germany, July 21 - July 23 2013

IBD Mapping of Autism Microarray Data - Beyond Linkage and Association Mapping _{Master Thesis}

Author(s):	Gundula Povysil
Published:	Master Thesis, Jan 2013