DeepSynergy: predicting anti-cancer drug synergy with Deep Learning _{Bioinformatics}

Author(s):	Kristina Preuer, Richard P. I. Lewis, Sepp Hochreiter, Andreas Bender, Krishna C Bulusu, Günter Klambauer
Published:	Bioinformatics, December 2017 doi.org/10.1093/bioinformatics/btx806, opens an external URL in a new window

Learning the High-Dimensional Immunogenomic Features That Predict Public and Private Antibody Repertoires _{J Immunol}

Author(s):	Victor Greiff, Cédric R. Weber, Johannes Palme, Ulrich Bodenhofer, Enkelejda Miho, Ulrike Menzel, Sai T. Reddy
Published:	J Immunol September 18, 2017 doi.org/10.4049/jimmunol.1700594, opens an external URL in a new window

Rectified factor networks for biclustering of omics data _{Bioinformatics}

Author(s):	Djork-Arné Clevert, Thomas Unterthiner, Gundula Povysil, Sepp Hochreiter
Published:	Bioinformatics 33(14):i59-i66, 2017 doi.org/10.1093/bioinformatics/btx226, opens an external URL in a new window

panelcn.MOPS: Copy number detection in targeted NGS panel data for clinical diagnostics _{Human Mutation}

Author(s):	Gundula Povysil, Antigoni Tzika, Julia Vogt, Verena Haunschmid, Ludwine Messiaen, Johannes Zschocke, Günter Klambauer, Sepp Hochreiter, Katharina Wimmer
Published:	Human Mutation, 38(7):889-897, 2017 doi:10.1002/humu.23237, opens an external URL in a new window

Self-Normalizing Neural Networks _NIPS

Author(s):	Günter Klambauer, Thomas Unterthiner, Andreas Mayr, Sepp Hochreiter
Published:	Conference Neural Information Processing Systems Foundation (NIPS 2017), December 4-9, 2017

GANs Trained by a Two Time-Scale Update Rule Converge to a Nash Equilibrium _NIPS

Author(s):	Martin Heusel, Hubert Ramsauer, Thomas Unterthiner, Bernhard Nessler, Günter Klambauer, Sepp Hochreiter
Published:	Conference Neural Information Processing Systems Foundation (NIPS 2017), December 4-9, 2017

Robust Learning by Conditional Independence of Hidden Units _NIPS

Author(s):	Karin Schwarzbauer, Markus Hofmarcher, Thomas Adler, Sepp Hochreiter
Published:	Women in Machine Learning Workshop, Conference Neural Information Processing Systems Foundation (NIPS 2017), December 4-9, 2017

DeepSynergy: Prediction of synergies of anti-cancer drugs with Deep Learning _NIPS

Author(s):	Kristina Preuer, Richard P.I. Lewis, Sepp Hochreiter, Andreas Bender, Krishna C. Bulusu, Günter Klambauer
Published:	Women in Machine Learning Workshop, Conference Neural Information Processing Systems Foundation (NIPS 2017), December 4-9, 2017

Convolutional Neural Networks for Subcellular Protein Localization _NIPS

Author(s):	Elisabeth Rumetshofer, Markus Hofmarcher, Sepp Hochreiter, Günter Klambauer
Published:	Women in Machine Learning Workshop, Conference Neural Information Processing Systems Foundation (NIPS 2017), December 4-9, 2017

panelcn.MOPS - a mixture of Poissons model for copy number detection _NIPS

Author(s):	Gundula Povysil, Günter Klambauer, Katharina Wimmer, Sepp Hochreiter
Published:	Women in Machine Learning Workshop, Conference Neural Information Processing Systems Foundation (NIPS 2017), December 4-9, 2017

HapRFN: Rectified Factor Networks for identifying short IBD segments _NIPS

Author(s):	Gundula Povysil, Djork-Arné Clevert, Sepp Hochreiter
Published:	Workshop on Machine Learning in Computational Biology, Conference Neural Information Processing Systems Foundation (NIPS 2017), December 4-9, 2017

Position kernels as a key to making sense of very rare and private single-nucleotide variants _NIPS

Author(s):	Ulrich Bodenhofer, Sepp Hochreiter
Published:	Workshop on Machine Learning in Computational Biology, Conference Neural Information Processing Systems Foundation (NIPS 2017), December 4-9, 2017
Download:	PDF, opens an external URL in a new window

Machine Learning-Based Risk Profile Classification: A Case Study for Heart Valve Surgery _NIPS

Author(s):	Ulrich Bodenhofer, Bettina Haslinger-Eisterer, Alexander Minichmayer, Georg Hermanutz, Jens Meier
Published:	Workshop on Machine Learning for Health, Conference Neural Information Processing Systems Foundation (NIPS 2017), December 4-9, 2017
Download:	PDF, opens an external URL in a new window

Deep Learning for Prediction of Synergistic Effects of Anti-cancer Drugs _NIPS

Author(s):	Kristina Preuer, Richard P.I. Lewis, Sepp Hochreiter, Andreas Bender, Krishna C. Bulusu, Günter Klambauer
Published:	Workshop on Machine Learning for Molecules and Materials, Conference Neural Information Processing Systems Foundation (NIPS 2017), December 4-9, 2017

Deep Learning Yields Virtual Assays _NIPS

Author(s):	Thomas Unterthiner, Günter Klambauer, Andreas Mayr, Sepp Hochreiter
Published:	Workshop on Machine Learning for Molecules and Materials, Conference Neural Information Processing Systems Foundation (NIPS 2017), December 4-9, 2017

Toxicity Prediction Using Self-normalizing Networks _NIPS

Author(s):	Günter Klambauer, Thomas Unterthiner, Andreas Mayr, Sepp Hochreiter
Published:	Workshop on Machine Learning for Molecules and Materials, Conference Neural Information Processing Systems Foundation (NIPS 2017), December 4-9, 2017

Machine Learning-Based Individualized Prognosis _{Whitebook Medical Technology}

Author(s):	Ulrich Bodenhofer, Jens Meier, Bettina Haslinger-Eisterer
Published:	Whitebook Medical Technology, ISBN 978-3-200-05215-4, pp. 22-23, 2017

GANs Trained by a Two Time-Scale Update Rule Converge to a Nash Equilibrium _arXiv.org

Author(s):	Martin Heusel, Hubert Ramsauer, Thomas Unterthiner, Bernhard Nessler, Günter Klambauer, Sepp Hochreiter
Published:	arXiv.org, June 2017
Download:	arXiv:1706.08500, opens an external URL in a new window

Self-Normalizing Neural Networks _arXiv.org

Author(s):	Günter Klambauer, Thomas Unterthiner, Andreas Mayr, Sepp Hochreiter
Published:	arXiv.org, June 2017
Download:	arXiv:1706.02515, opens an external URL in a new window

Repurposed High-Throughput Images Enable Biological Activity Prediction For Drug Discovery _biorxiv.org

Author(s):	Jaak Simm, Guenter Klambauer, Adam Arany, Marvin Steijaert, Joerg Kurt Wegner, Emmanuel Gustin, Vladimir Chupakhin, Yolanda T. Chong, Jorge Vialard, Peter Buijnsters, Ingrid Velter, Alexander Vapirev, Shantanu Singh, Anne Carpenter, Roel Wuyts, Sepp Hochreiter, Yves Moreau, Hugo Ceulemans
Published:	biorxiv.org, March 2017
Download:	doi:10.1101/108399, opens an external URL in a new window

Moment Dynamics in Self-Normalising Neural Networks _{Master Thesis}

Published:	Master Thesis, 2017
Author(s):	Pieter-Jan Hoedt

Analyzing NGS Data with Machine Learning - From IBD Segments to Copy Number Variations _{PhD Thesis}

Published:	PhD Thesis, 2017
Author(s):	Gundula Povysil

Comparison of Rare Variant Association Tests on UK10K Whole Genome Sequencing Data _{Master Thesis}

Published:	Master Thesis, 2017
Author(s):	Bellatrix Szantho

Convolutional LSTM for Next Frame Prediction _{Master Thesis}

Published:	Master Thesis, 2017
Author(s):	Thomas Adler

About gradient based importance weighting in feed-forward artificial neural networks _{Master Thesis} 

Published:	Master Thesis, 2017
Author(s):	Hubert Ramsauer